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IRS Form 944 (2016): Late & Amended Filing Guide

For over two decades, our licensed tax professionals have helped individuals and businesses resolve back taxes, stop collections, and restore financial peace. At Get Tax Relief Now™, we handle every step—from negotiating with the IRS to securing affordable solutions—so you can focus on rebuilding your financial life.

What IRS Form 944 (2016) Is For

IRS Form 944 (2016) is the Employer’s Annual Federal Tax Return used by small businesses with annual payroll tax liabilities of $1,000 or less. It simplifies reporting for employers required to pay Social Security, Medicare, and federal income taxes that have been withheld. This form replaces the quarterly Form 941 for eligible employers authorized by the IRS to file annually, rather than quarterly.

The form ensures that small businesses accurately report their federal tax withholdings and avoid unnecessary late-filing penalties or interest. It also confirms that employers meet their annual tax payment obligations under federal law.

When You’d Use IRS Form 944 for 2016

Small employers use IRS Form 944 for 2016 when their annual federal tax liability for Social Security, Medicare, and income tax withholdings is $1,000 or less. Filing late or amending a past return often occurs when a taxpayer receives an IRS notice, finds missing payments, or identifies errors on previous filings. Knowing when to file or correct this form helps prevent penalties and interest from growing.

Eligibility and Purpose

Employers file IRS Form 944 for 2016 when authorized for annual reporting instead of quarterly filings. The IRS grants this option to businesses with low payroll tax liability.

Everyday Situations for Filing or Amending

  • The 2016 due date was missed.

  • The IRS sent a letter notifying the taxpayer that their tax return was missing or incorrect.

  • The taxpayer must correct filing errors using Form 944-X.

  • The taxpayer needs to submit penalty relief or reasonable cause requests to the IRS..

Key Rules or Details for 2016

Understanding the 2016 payroll tax requirements helps employers prepare accurate filings and avoid costly penalties. Each rule affects how small businesses calculate their annual tax liability, submit payments, and maintain compliance with IRS regulations.

Social Security and Medicare Taxes

For 2016, the Social Security tax rate was 6.2% for both employers and employees, up to a wage limit of $118,500. The Medicare rate was 1.45% for each, with an additional 0.9% tax on employee wages exceeding $200,000 per year.

Filing Deadlines and Payment Requirements

The due date for Form 944 was January 31, 2017, or February 10 if all deposits were made on time. Employers with over $2,500 in total tax liability were required to use EFTPS for all federal tax payments.  

Step-by-Step (High Level)

Filing IRS Form 944 for 2016 requires organization, attention to detail, and complete documentation. Using a straightforward process ensures the accuracy of wage data and prevents future disputes over tax liabilities or payment records.

Steps to Complete and File Form 944

  • Gather essential records: The taxpayer should collect payroll summaries, employee wage data, and any IRS notices related to unpaid taxes or prior filings.

  • Verify reported amounts: The employer must confirm that the totals for Social Security, Medicare, and federal income tax match payroll and accounting records.

  • Use the correct form: The employer should complete the official 2016 version of Form 944 and verify that all calculations match the employee's W-2 information.

  • Submit payments properly: The taxpayer must use EFTPS to make all federal tax payments when the total tax liability exceeds $2,500.

  • Keep complete records: The employer should retain proof of filing, payment confirmations, and IRS correspondence for a minimum of four years.

Common Mistakes and How to Avoid Them

Many small employers filing IRS Form 944 for 2016 face preventable mistakes that can result in penalties or IRS notices. Understanding how to avoid these issues helps protect your business from unnecessary interest and compliance risks.

Frequent Errors and How to Prevent Them

  • Incorrect Employer Identification Number (EIN): The employer should verify the EIN on every page of the return to ensure it matches IRS records and prevent processing delays.

  • Failure to File Penalty: The taxpayer must submit the return and payment before the deadline to avoid monthly penalties that accrue for each partial month the return is late.

  • Unpaid Employment Taxes: The employer should schedule payments through EFTPS or an approved IRS payment plan to ensure the full balance is received and properly credited.

  • Incomplete or Misreported Data: The taxpayer needs to double-check totals for Social Security, Medicare, and withheld federal income taxes before mailing or e-filing.

  • Ignoring IRS Notices: The taxpayer must respond immediately to balance due or correction letters and request penalty relief when qualifying under the reasonable cause exception.

Consistent recordkeeping, verified wage reporting, and timely payment submissions prevent errors and maintain compliance with IRS employment tax rules.  

What Happens After You File

After submitting IRS Form 944 for 2016, the IRS reviews your return to confirm accuracy and verify all tax payments, including Social Security, Medicare, and federal income tax withholdings. If differences appear, you may receive a notice explaining the issue or requesting an additional fee for your outstanding balance.

Employers unable to pay in full can apply for an IRS payment plan for employment taxes or request penalty relief if they have reasonable cause. Filing, even when late, helps prevent larger penalties and interest while showing good faith compliance with federal tax obligations.

FAQs: IRS Form 944 Late Filing and Penalties

Can I file IRS Form 944 late for the 2016 tax year?

Yes, taxpayers can file IRS Form 944 late for 2016 if their return was not submitted by the original due date. Penalties and interest accrue each partial month the tax remains unpaid, so filing promptly helps reduce the total balance owed.

What is the failure-to-file penalty?

The failure-to-file penalty is typically 5% of the unpaid tax for each month your tax return is late, up to a maximum of 25%. Filing even one day past the deadline can trigger the minimum penalty under federal tax law.

Can I request penalty relief or abatement?

Employers with a clean compliance history or reasonable cause, such as serious illness or postal service delays, may qualify for penalty relief. Submitting a written request for abatement can reduce or remove penalties and interest.

Are IRS payment plans available for employment taxes?

Yes, installment agreements allow taxpayers to pay their tax liabilities in monthly payments when they are unable to pay the full amount. Setting up a plan helps manage unpaid taxes while preventing further enforcement actions.

How can tax professionals help with late or amended returns?

Experienced tax professionals can prepare your taxpayer’s return, identify filing errors, and communicate with the IRS on your behalf. Their expertise ensures accurate tax payments, timely submission, and compliance with current tax regulations.

Checklist for IRS Form 944 (2016): Late & Amended Filing Guide

https://www.cdn.gettaxreliefnow.com/Payroll%20%26%20Employment%20Tax%20Forms/944/Employer%E2%80%99s%20ANNUAL%20Federal%20Tax%20Return%20944%20-%202016.pdf
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